iCipa scoring function

Sequences should start with the f register or be padded using a -.

When using this server please cite Boldrige, Ljubetic et al.,
A Multiplexed Bacterial Two-Hybrid for Rapid Characterization of Protein-Protein Interactions and Iterative Protein Design | bioRxiv

Sequence 1

Sequence 2

Alignment largest shift to scan (in residues). Will scan ± number of residues.

Truncate

Scoring function

iCipa (icipa_nter_core) iCipa variant (core_vert) bCipa Potapov et al

Orientation

Parallel Antiparallel Both

Score:

Alignment:

Orientation: